Introduction
⌛️ News
PhaBOX has now been upgraded to the 2.0 version with faster speed!
There are some major components, including:
- 🎉 Generalized for all kinds of viruses; more than just bacteriophage
- 🎉 Virus identification
- 🎉 Taxonomy classification
- 🎉 Host prediction
- 🎉 Lifestyle prediction
- 🎉 Contamination/provirus detection
- 🎉 vOTU grouping
- 🎉 Phylogenetic tree based on marker genes
- 🎉 Viral protein annotation
- 🎉 All the databases are updated to the latest ICTV 2024 release
If you have any more suggestions, feel free to let me know! We consider long-term maintenance PhaBOX and adding modules according to your needs. You can post an issue or directly email me (jiayushang@cuhk.edu.hk). We welcome any suggestions.
🚀 Quick Start
Please check our Tutorial page. We provide a tutorial to help you get started quickly and understand how to use PhaBOX2. We hope you will enjoy it!
All the explanations of Options and Output Format can be found via our WIKI
An example of the standard result page can be found via EXAMPLE.
💻 Local version
This is the source code of our website PhaBOX2.
📘 License
The PhaBOX pipelines are released under the terms of the Academic Free License v3.0 License.