Introduction

⌛️ News

PhaBOX has now been upgraded to the 2.0 version with faster speed!
There are some major components, including:

  • 🎉 Generalized for all kinds of viruses
  • 🎉 Virus identification
  • 🎉 Taxonomy classification
  • 🎉 Host prediction
  • 🎉 Lifestyle prediction
  • 🎉 Contamination/provirus detection
  • 🎉 vOTU grouping
  • 🎉 Phylogenetic tree based on marker genes
  • 🎉 Viral protein annotation
  • 🎉 All the databases are updated to the latest ICTV 2024 release

If you have any more suggestions, feel free to let me know! We consider long-term maintenance PhaBOX and adding modules according to your needs. You can post an issue or directly email me (jiayushang@cuhk.edu.hk). We welcome any suggestions.

🚀 Quick Start

Please check our Tutorial page. We provide a tutorial to help you get started quickly and understand how to use PhaBOX2. We hope you will enjoy it!

An example of the standard output can be found via EXAMPLE.

💻 Local version

This is the source code of our website PhaBOX2.

📘 License

The PhaBOX pipelines are released under the terms of the Academic Free License v3.0 License.